Season 3
The third season consists of 26 episodes, originally airing from August 2013 to June 2016.
In this season, BoBoiBoy defeats Ejo Jo, and Adu Du bin Abu Seman becomes BoBoiBoy's friend but he turns evil back again because of his mother. Boboiboy also gets his new Fire and Water Elemental powers.
This is the first season that new episodes would be uploaded onto YouTube before its first airing on TV. It is also the first season to change the theme song, switching out "BoBoiBoy Superhero Kita" (English: BoBoiBoy, Our Superhero!) with "Jagalah Bumi" by Kotak.
01. BoBoiBoy vs. Ejo Jo
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02. BoBoiBoy vs. Ejo Jo — Final Battle
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03. In Memory of Probe
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04. Operation Cocoa
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05. Cocoa Jumbo's Rampage
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06. Mr. Baga Ga's Service
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07. Rob, Robert, and Roberto's Robbery
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08. The Five Sly Scammers!
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09. The Battle on the Moon
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10. Papa Zola & Mama Zila
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11. Mama Zila Attacks
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12. Adu Du's Mom
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13. Adu Du's Return To Evil
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14. PangoBot & The Onion Monster
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15. The Arsonist
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16. BoBoiBoy Fire Ignites!
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17. Danger: BoBoiBot
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18. Everybody Loves BoBoiBot
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19. BoBoiBoy's Water Surprise
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20. Rise Up! BoBoiBoy Water!
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21. Special Episode: Saving Planet Earth (Part 1)
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22. Special Episode: Saving Planet Earth (Part 2)
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23. Special Episode: Saving Planet Earth (Part 3)
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24. Enemies, Old and New
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25. Between Friend and Foe
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26. See You Next Time, BoBoiBoy
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